# This is the template for setting up the Ontorat input conditions. 
# Any text after # is just for notes and won't be used by Ontorat.

[Online URL of the target OWL file (RDF/XML format)]
# Note: Local file won't be used by Ontorat for security reason.   
http://ontorat.hegroup.org/examples/vo.owl

[Online URL of the data file (Only Excel file (.xls, .xlsx) or tab-delimited text file (.txt)]
# Note: Local file won't be used by Ontorat for security reason. 
http://ontorat.hegroup.org/examples/eg1_data_file.xlsx


Actual data starts from row: 2


[New axioms will be used to]
# Note: two options: 1. "generate new classes", 
# or 2. "edit existing classes with term IDs defined in column A(or another letter)"
generate new classes
  
[Annotations]
# Note: Use comma to separate annotations
'label' "{$columnA} ({$columnB})",
'seeAlso' "{$columnB}", 
'seeAlso' "violinID:{$columnO}"

[Equivalent classes]
# Note: Use comma to separate classes 


[Superclasses]
# Note: Use comma to separate classes 
<http://purl.obolibrary.org/obo/{$columnD}>,
'vaccine immunization against microbe' some <http://purl.obolibrary.org/obo/NCBITaxon_{$columnF}>,
'vaccine immunization for host' some <http://purl.obolibrary.org/obo/NCBITaxon_{$columnH}>,
'bearer_of' some <http://purl.obolibrary.org/obo/{$columnL}>,
'is_manufactured_by' some ({$columnN})

[Terms used to define anntoations, equivalent classes and superclasses]
# Note: One line per term
AnnotationProperty: 
Class:
ObjectProperty: 
'is_manufactured_by': <http://purl.obolibrary.org/obo/OBI_0000304> 
'bearer_of': <http://purl.obolibrary.org/obo/bearer_of> 
'vaccine immunization for host': <http://purl.obolibrary.org/obo/VO_0001243> 
'vaccine immunization against microbe': <http://purl.obolibrary.org/obo/VO_0003355> 
DataProperty:

[Term URIs start with]
# Note: provide a prefix ontology URIs
http://purl.obolibrary.org/obo/

[Auto-generated term ID]
# Note: Prefix like "VO_", number of digits like "7", and start from like "1".
Prefix: VO_
Number of digits: 7
Start from:  1