Design Pattern, Template, and Example: OBI Assay

Task: Add assay terms into Ontology for Biomedical Investigations (OBI) based on OBI assay design pattern.

1. Design Pattern:

Diagram:

2. Ontorat Template Files:

Ontorat setting file: Ontorat_settings_assay.txt (.txt format)

Ontorat input template file: Ontorat_input_assay_template.xlsx (.xlsx format)

 

3. Ontorat Example:

Introduction: This example aims to add assay terms into Ontology for Biomedical Investigations (OBI) for ENCODE project based on OBI assay design pattern.

Ontorat input data file (based on template): Ontorat_input_assay.xlsx (.xlsx format)

Ontorat output file: Ontorat_output_assay.owl (.owl format)

Ontorat output new IDs file when adding new ontology classes: Ontorat_output_newIds_assay.xlsx (.xlsx format)

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